Developing lymphocytes diversify their antigen receptor (AgR) loci by variable (diversity) joining (V[D]J) recombination. Here, using the micrococcal nuclease (MNase)-based chromatin accessibility (MACC) assay with low-cell count input, we profile both small-scale (kilobase) and large-scale (megabase) changes in chromatin accessibility and nucleosome occupancy in primary cells during lymphoid development, tracking...
“In God we trust. All others bring data.” So reads a T-shirt sold by the American Statistical Association. This pithy quip encapsulates a fundamental principle of science: Scientists rely on evidence rather than authority. Indeed, “doubt has been considered essential to science since long before the scientific method was established...
The mannose-6-phosphate isomerase (Mpi) locus in Semibalanus balanoides has been studied as a candidate gene for balancing selection for more than two decades. Previous work has shown that Mpi allozyme genotypes (fast and slow) have different frequencies across Atlantic intertidal zones due to selection on postsettlement survival (i.e., allele zonation)....
Yu et al. (1) propose a viscoelastic fluid as a prophylactic fire-retardant treatment in landscapes at high risk of wildfires. We argue that, while the idea is worth exploring further, their data do not support its suitability for real landscape-scale applications. First, they report their fluid is environmentally benign because...
The lateral hypothalamus (LH) has long been implicated in maintaining behavioral homeostasis essential for the survival of an individual. However, recent evidence suggests its more widespread roles in behavioral coordination, extending to the social domain. The neuronal and circuit mechanisms behind the LH processing of social information are unknown. Here,...
Our recent paper (1) reports the development and pilot-scale validation of viscoelastic carrier fluids for ammonium polyphosphate (APP), the primary retardant used in wildland firefighting, to improve retention on common ignition-prone vegetation to protect through environmental exposure. In response to our paper, Santín et al. (2) state that while our...
This work addresses the challenge of underactuated pattern generation in continuous multistable structures. The examined configuration is a slender membrane which can concurrently sustain two different equilibria states, separated by transition regions, and is actuated by a viscous fluid. We first demonstrate the formation and motion of a single transition...
While pore-forming toxins (PFTs) are a large class of molecular weapons employed by organisms across the animal kingdom (1), notably, pathogenic bacteria, many mechanistic steps of pore formation in target membranes are unknown. In PNAS, using molecular dynamics (MD) simulations, Vӧgele et al. (2) observed how central lipids corresponding to...
Type III IFN lambdas (IFN-λ) have recently been described as important mediators of immune responses at barrier surfaces. However, their role in autoimmune diseases such as systemic lupus erythematosus (SLE), a condition characterized by aberrant type I IFN signaling, has not been determined. Here, we identify a nonredundant role for...
Pore-forming toxins (PFTs) are a diverse class of membrane-active proteins employed primarily by bacteria for unregulated perforation of lipid membranes (1). Based on molecular dynamics (MD) simulations (2), electron cryo-microscopy (cryoEM) structures (3), and atomic force microscopy (AFM) experiments (4), we recently identified two distinct pathways for lipid efflux from...
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